Package: ctpm 1.0.0
ctpm: Continuous-Time Phylogenetic Modeling
Functions for identifying, fitting, and applying continuous-time stochastic models to phylogenetic data. The package is based on methods introduced in Fleming et al (2014) <doi:10.1086/675504>.
Authors:
ctpm_1.0.0.tar.gz
ctpm_1.0.0.zip(r-4.5)ctpm_1.0.0.zip(r-4.4)ctpm_1.0.0.zip(r-4.3)
ctpm_1.0.0.tgz(r-4.4-any)ctpm_1.0.0.tgz(r-4.3-any)
ctpm_1.0.0.tar.gz(r-4.5-noble)ctpm_1.0.0.tar.gz(r-4.4-noble)
ctpm_1.0.0.tgz(r-4.4-emscripten)ctpm_1.0.0.tgz(r-4.3-emscripten)
ctpm.pdf |ctpm.html✨
ctpm/json (API)
NEWS
# Install 'ctpm' in R: |
install.packages('ctpm', repos = c('https://noonanm.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/noonanm/ctpm/issues
- moid_traits - Trait data on 57 species of extant musteloids.
- musteloids - Musteloidea phylogeny.
Last updated 3 years agofrom:892be558f9. Checks:OK: 5 NOTE: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 09 2024 |
R-4.5-win | NOTE | Oct 09 2024 |
R-4.5-linux | NOTE | Oct 09 2024 |
R-4.4-win | OK | Oct 09 2024 |
R-4.4-mac | OK | Oct 09 2024 |
R-4.3-win | OK | Oct 09 2024 |
R-4.3-mac | OK | Oct 09 2024 |
Dependencies:apeBesselcachemclassclassIntcliClusterRcolorspacecrayonctmmdata.tableDBIDEoptimRdigeste1071expmfansifarverfastmapfasttimeggplot2glueGmediangmpgslgtableisobandKernSmoothlabelinglatticelifecyclemagrittrmanipulateMASSMatrixmemoisemgcvmunsellnlmenumDerivparsedatepbivnormpillarpkgconfigpracmaproxyR6rasterRColorBrewerRcppRcppArmadilloRcppEigenrlangRmpfrrobustbaseRSpectras2scalessfshapeslouchspstatmodterratibbleunitsutf8vctrsviridisLitewithrwk
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Fit models to phylogenetic data. | ctpm.fit |
Trait data on 57 species of extant musteloids. | moid_traits |
Musteloidea phylogeny. | musteloids |
Plotting methods for variogram objects. | plot.vg |
Calculate an empirical variogram from phylogenetic data. | variogram |