Package: ctpm 1.0.0

ctpm: Continuous-Time Phylogenetic Modeling

Functions for identifying, fitting, and applying continuous-time stochastic models to phylogenetic data. The package is based on methods introduced in Fleming et al (2014) <doi:10.1086/675504>.

Authors:Michael J. Noonan [aut, cre], Christen H. Fleming [aut]

ctpm_1.0.0.tar.gz
ctpm_1.0.0.zip(r-4.5)ctpm_1.0.0.zip(r-4.4)ctpm_1.0.0.zip(r-4.3)
ctpm_1.0.0.tgz(r-4.5-any)ctpm_1.0.0.tgz(r-4.4-any)ctpm_1.0.0.tgz(r-4.3-any)
ctpm_1.0.0.tar.gz(r-4.5-noble)ctpm_1.0.0.tar.gz(r-4.4-noble)
ctpm_1.0.0.tgz(r-4.4-emscripten)ctpm_1.0.0.tgz(r-4.3-emscripten)
ctpm.pdf |ctpm.html✨
ctpm/json (API)
NEWS

# Install 'ctpm' in R:
install.packages('ctpm', repos = c('https://noonanm.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/noonanm/ctpm/issues

Datasets:

On CRAN:

Conda:

3.70 score 9 scripts 738 downloads 2 exports 71 dependencies

Last updated 3 years agofrom:892be558f9. Checks:6 OK, 3 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 08 2025
R-4.5-winNOTEMar 08 2025
R-4.5-macNOTEMar 08 2025
R-4.5-linuxNOTEMar 08 2025
R-4.4-winOKMar 08 2025
R-4.4-macOKMar 08 2025
R-4.4-linuxOKMar 08 2025
R-4.3-winOKMar 08 2025
R-4.3-macOKMar 08 2025

Exports:ctpm.fitvariogram

Dependencies:apeBesselcachemclassclassIntcliClusterRcolorspacecrayonctmmdata.tableDBIDEoptimRdigeste1071expmfansifarverfastmapfasttimeggplot2glueGmediangmpgslgtableisobandKernSmoothlabelinglatticelifecyclemagrittrmanipulateMASSMatrixmemoisemgcvmunsellnlmenumDerivparsedatepbivnormpillarpkgconfigpracmaproxyR6rasterRColorBrewerRcppRcppArmadilloRcppEigenrlangRmpfrrobustbaseRSpectras2scalessfshapeslouchspstatmodterratibbleunitsutf8vctrsviridisLitewithrwk

Phylogenetic variograms

Michael J. Noonan Christen H. Fleming

Rendered fromvariogram.Rmdusingknitr::rmarkdownon Mar 08 2025.

Last update: 2021-11-04
Started: 2021-11-04